Run RNA-PolIII-core-C31-91 (adq_3OD7FTi0)
Status: FINISHED
Your DisVis run has successfully completed.
Please cite the following papers in your work:- R.V. Honorato, P.I. Koukos, B. Jimenez-Garcia, A. Tsaregorodtsev, M. Verlato, A. Giachetti, A. Rosato and A.M.J.J. Bonvin (2021). Structural biology in the clouds: The WeNMR-EOSC Ecosystem. Frontiers Mol. Biosci., 8, fmolb.2021.729513.
- G.C.P. van Zundert, M. Trellet, J. Schaarschmidt, Z. Kurkcuoglu, M. David, M. Verlato, A. Rosato and A.M.J.J. Bonvin (2016)
The DisVis and PowerFit web servers: Explorative and Integrative
Modeling of Biomolecular Complexes.
J. Mol. Biol., Advanced Online Publication. - G.C.P. van Zundert and A.M.J.J. Bonvin (2015) DisVis: Quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes." Bioinformatics 31, 3222-3224.
Note: Your results will be stored for 14 days before being removed from the server, please make a backup as soon as possible.
Questions / feedback ? ask.bioexcel.eu
Please also consider giving us some feedback by filling our online survey.
Accessible Interaction Space
The accessible interaction space consistent with at least N restraints is depicted below. Use the slider to adjust N and the arrows on the side of the images to change the view.
Current Level (N): 3
Images were generated with UCSF Chimera.
Accessible Complexes
The table below lists the number of complexes consistent with at least N restraints as raw number and as fraction of all complexes.
Number of consistent restraints (N) | Number of accessible complexes consistent with at least N restraints | Fraction of accessible complexes consistent with at least N restraints |
---|---|---|
0 | 153993442 | 100.00 % |
1 | 20931178 | 13.59 % |
2 | 15273657 | 9.92 % |
3 | 8291309 | 5.38 % |
4 | 4570579 | 2.97 % |
5 | 257664 | 0.17 % |
z-Score
IMPORTANT! Complexes consistent with all restraints you provided exist indicating that there are no false positives among your restraints. The tables listing z-Scores and Violations can thus be ignored but are provided as part of the DisVis output nevertheless.
# | Restraint | Average violated fraction | Standard deviation | Z-score |
---|---|---|---|---|
1 | A1458(CB)-F91(CB) | 0.65 | 0.33 | 1.98 |
2 | A3402(CB)-F91(CB) | 0.15 | 0.18 | -0.74 |
3 | A4206(CB)-F91(CB) | 0.20 | 0.19 | -0.47 |
4 | A4359(CB)-F91(CB) | 0.23 | 0.21 | -0.29 |
5 | A4361(CB)-F91(CB) | 0.20 | 0.18 | -0.47 |
Violations
IMPORTANT! Complexes consistent with all restraints you provided exist indicating that there are no false positives among your restraints. The tables listing z-Scores and Violations can thus be ignored but are provided as part of the DisVis output nevertheless.
Number of consistent restraints (N) | Restraint 1 | Restraint 2 | Restraint 3 | Restraint 4 | Restraint 5 |
---|---|---|---|---|---|
1 | 0.75 | 0.42 | 0.49 | 0.52 | 0.46 |
2 | 0.79 | 0.30 | 0.32 | 0.39 | 0.34 |
3 | 0.80 | 0.02 | 0.19 | 0.24 | 0.17 |
4 | 0.91 | 0.00 | 0.00 | 0.01 | 0.03 |