Run RNA-PolIII-C82-C34 (few_3ODcW7l5)
Status: FINISHED
Your DisVis run has successfully completed.
Please cite the following papers in your work:- R.V. Honorato, P.I. Koukos, B. Jimenez-Garcia, A. Tsaregorodtsev, M. Verlato, A. Giachetti, A. Rosato and A.M.J.J. Bonvin (2021). Structural biology in the clouds: The WeNMR-EOSC Ecosystem. Frontiers Mol. Biosci., 8, fmolb.2021.729513.
- G.C.P. van Zundert, M. Trellet, J. Schaarschmidt, Z. Kurkcuoglu, M. David, M. Verlato, A. Rosato and A.M.J.J. Bonvin (2016)
The DisVis and PowerFit web servers: Explorative and Integrative
Modeling of Biomolecular Complexes.
J. Mol. Biol., Advanced Online Publication. - G.C.P. van Zundert and A.M.J.J. Bonvin (2015) DisVis: Quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes." Bioinformatics 31, 3222-3224.
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Accessible Interaction Space
The accessible interaction space consistent with at least N restraints is depicted below. Use the slider to adjust N and the arrows on the side of the images to change the view.
Current Level (N): 2
Images were generated with UCSF Chimera.
Accessible Complexes
The table below lists the number of complexes consistent with at least N restraints as raw number and as fraction of all complexes.
Number of consistent restraints (N) | Number of accessible complexes consistent with at least N restraints | Fraction of accessible complexes consistent with at least N restraints |
---|---|---|
0 | 60595498 | 100.00 % |
1 | 6175728 | 10.19 % |
2 | 3980942 | 6.57 % |
3 | 2099304 | 3.46 % |
z-Score
IMPORTANT! Complexes consistent with all restraints you provided exist indicating that there are no false positives among your restraints. The tables listing z-Scores and Violations can thus be ignored but are provided as part of the DisVis output nevertheless.
# | Restraint | Average violated fraction | Standard deviation | Z-score |
---|---|---|---|---|
1 | B520(CB)-C135(CB) | 0.19 | 0.14 | 0.67 |
2 | B520(CB)-C138(CB) | 0.12 | 0.15 | -1.41 |
3 | B520(CB)-C141(CB) | 0.19 | 0.14 | 0.74 |
Violations
IMPORTANT! Complexes consistent with all restraints you provided exist indicating that there are no false positives among your restraints. The tables listing z-Scores and Violations can thus be ignored but are provided as part of the DisVis output nevertheless.
Number of consistent restraints (N) | Restraint 1 | Restraint 2 | Restraint 3 |
---|---|---|---|
1 | 0.33 | 0.33 | 0.35 |
2 | 0.23 | 0.02 | 0.22 |